CDS

Accession Number TCMCG065C19516
gbkey CDS
Protein Id XP_004970308.1
Location complement(join(39602885..39603202,39603294..39603380,39603857..39604057,39604131..39604335,39605090..39605868))
Gene LOC101774090
GeneID 101774090
Organism Setaria italica

Protein

Length 529aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA207554
db_source XM_004970251.4
Definition ribonuclease III domain-containing protein RNC1, chloroplastic [Setaria italica]

EGGNOG-MAPPER Annotation

COG_category A
Description Binds specific group II introns in chloroplasts and facilitates their splicing. Acts on both subgroup IIA and subgroup IIB introns. The substrates of the subgroup II also require the CRM domain proteins CAF1 or CAF2. Binds both single-stranded and double-stranded RNA non-specifically, but lacks endonuclease activity. Required for plastid ribosome biogenesis
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE -
KEGG_ko -
EC -
KEGG_Pathway -
GOs GO:0000373        [VIEW IN EMBL-EBI]
GO:0000375        [VIEW IN EMBL-EBI]
GO:0000377        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003676        [VIEW IN EMBL-EBI]
GO:0003723        [VIEW IN EMBL-EBI]
GO:0003725        [VIEW IN EMBL-EBI]
GO:0003727        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0004518        [VIEW IN EMBL-EBI]
GO:0004519        [VIEW IN EMBL-EBI]
GO:0004521        [VIEW IN EMBL-EBI]
GO:0004525        [VIEW IN EMBL-EBI]
GO:0004540        [VIEW IN EMBL-EBI]
GO:0005488        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006396        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0008380        [VIEW IN EMBL-EBI]
GO:0009507        [VIEW IN EMBL-EBI]
GO:0009532        [VIEW IN EMBL-EBI]
GO:0009536        [VIEW IN EMBL-EBI]
GO:0009570        [VIEW IN EMBL-EBI]
GO:0009892        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010033        [VIEW IN EMBL-EBI]
GO:0010467        [VIEW IN EMBL-EBI]
GO:0010468        [VIEW IN EMBL-EBI]
GO:0010605        [VIEW IN EMBL-EBI]
GO:0010608        [VIEW IN EMBL-EBI]
GO:0010629        [VIEW IN EMBL-EBI]
GO:0014070        [VIEW IN EMBL-EBI]
GO:0016070        [VIEW IN EMBL-EBI]
GO:0016246        [VIEW IN EMBL-EBI]
GO:0016441        [VIEW IN EMBL-EBI]
GO:0016458        [VIEW IN EMBL-EBI]
GO:0016787        [VIEW IN EMBL-EBI]
GO:0016788        [VIEW IN EMBL-EBI]
GO:0016891        [VIEW IN EMBL-EBI]
GO:0016893        [VIEW IN EMBL-EBI]
GO:0019222        [VIEW IN EMBL-EBI]
GO:0022613        [VIEW IN EMBL-EBI]
GO:0030422        [VIEW IN EMBL-EBI]
GO:0031047        [VIEW IN EMBL-EBI]
GO:0031050        [VIEW IN EMBL-EBI]
GO:0031053        [VIEW IN EMBL-EBI]
GO:0031054        [VIEW IN EMBL-EBI]
GO:0032296        [VIEW IN EMBL-EBI]
GO:0034470        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0034660        [VIEW IN EMBL-EBI]
GO:0035194        [VIEW IN EMBL-EBI]
GO:0035195        [VIEW IN EMBL-EBI]
GO:0035196        [VIEW IN EMBL-EBI]
GO:0040029        [VIEW IN EMBL-EBI]
GO:0042221        [VIEW IN EMBL-EBI]
GO:0042254        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043331        [VIEW IN EMBL-EBI]
GO:0044085        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044434        [VIEW IN EMBL-EBI]
GO:0044435        [VIEW IN EMBL-EBI]
GO:0044444        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0048519        [VIEW IN EMBL-EBI]
GO:0050789        [VIEW IN EMBL-EBI]
GO:0050896        [VIEW IN EMBL-EBI]
GO:0051716        [VIEW IN EMBL-EBI]
GO:0060255        [VIEW IN EMBL-EBI]
GO:0065007        [VIEW IN EMBL-EBI]
GO:0070887        [VIEW IN EMBL-EBI]
GO:0070918        [VIEW IN EMBL-EBI]
GO:0071310        [VIEW IN EMBL-EBI]
GO:0071359        [VIEW IN EMBL-EBI]
GO:0071407        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0071840        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0090305        [VIEW IN EMBL-EBI]
GO:0090501        [VIEW IN EMBL-EBI]
GO:0090502        [VIEW IN EMBL-EBI]
GO:0097159        [VIEW IN EMBL-EBI]
GO:0140098        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901363        [VIEW IN EMBL-EBI]
GO:1901698        [VIEW IN EMBL-EBI]
GO:1901699        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGGCGCCACCCGCCATGGCGTTCCAAGTCCTCACCCTCACGCCACTCCCCCTCTCTCTCCCCAGCTCGAACCGCCGATTTCGCGTCCGCGTCCTCGCCGTCGCGGCCGACCAGACCCCTCCGCCGCCGCCGGTGCCCCCTTCGGAGCCGGCGAACAGCCCTAGCCGCCTCCTCCGGGAGCTCGCGCAGCGGAAGAAGGCCGTATCCCCCAAGAAGAAGCACCCGCCGCGCCGGTTCATCCTCAAGCCTCCGCTCGACGACGAGCGCCTCACCCGGCGTTTCCTCAGCAGCCCGCAGTTGTCACTCAAGGCGCTCCCGCTGCTCTCCTCATGCCTCCCCTCCGCGCCGCTCTCCACCGCCGACAGGACCTGGATGGACGAGTACCTCCTCGAGGCCAAGCAGGCGCTCGGGTACCCGCTCGCGCCCTCGGAGACGCTCGGCGAAGGTGATGACTGCCCCGCCCGTCATTTCGATGTGCTGCTCTACCTCGCGTTCCAGCATCTGGACCCCTCCTGCGAGCGCACGCGGACGCGGCACGTCCGGAACGGCCACTCCAGGCTCTGGTTCCTGGGCCAGTACGTCCTGGAGCTCGCGTTCTGTGAGTTCTTCTTGCAGAGGTACCCGAGGGAATCACCCGGGCCGATGAGGGAGCGGGTGTTCGCTCTGATTGGGAAGAAGGTGTTGCCCAAATGGCTCAAGGCGGCCAGCCTGCACAACTTGGTGTTCCCTTATGATGATTTGGATAAGATGATACGCAAGGACCGGGAGCCGCCATCCAAGGCTGTATTCTGGGCATTATTTGGGGCTATATATTTGTGCTTTGGGATGCCCGAAGTCTATCGAGTCCTTTTTGAGGCATTTGGGATGGACCCTGATGATGAGAGCTGTCAGCCAAAATTGAGGCGCCAACTAGAAGATGTTGATTATGTCTCAGTGGAGTTTGAAAAGAGACAACTCACATGGCAGGATGTTGCTGCCTACAGGCCACCACCAGATGCCCTTTTCGCTCATCCGAGGCTTTTCCGAGCTTGTGTGCCACCAGGCATGCATCGTTTCAGAGGAAACATTTGGGATTTTGACAGTAGACCCAAGGTCATGAACACCCTAGGATATCCCTTGCCCATGAATGACAGAATTCCTGAAATCACAGAAGCAAGGAATATAGAGCTTGGACTTGGTCTACAGCTCTGCTTTTTGCACCCGTCAAAACATAAGTTTGAGCATCCAAGATTCTGTTTTGAGCGACTCGAATATGTTGGCCAGAAGATTCAGGATCTTGTGCTGGCTGAGAGGCTGCTCATGAAGCATCTAGATGCACCAGGCAGGTGGTTGGCGGAGAAGCATAGGAGGATGTTGATGAACAAGTATTGCGGACGATACCTGCGGGACAAGCACCTGCACCACTACGTTATCTATGGGGAATCGGTGCAAGAGAAATTTGAACACAACCGACGTCTCAGGAATCCTTCAACAACCTCTGTCCAGCAAGCGTTACACGGGCTTGCATACTGTGTGTATGGCAAACCTGACGTGCGGCGCTTGATGTTTGAGGTGTTTGACTTCGAACAGGTTCAGCCGAAAGCAGTATGA
Protein:  
MAPPAMAFQVLTLTPLPLSLPSSNRRFRVRVLAVAADQTPPPPPVPPSEPANSPSRLLRELAQRKKAVSPKKKHPPRRFILKPPLDDERLTRRFLSSPQLSLKALPLLSSCLPSAPLSTADRTWMDEYLLEAKQALGYPLAPSETLGEGDDCPARHFDVLLYLAFQHLDPSCERTRTRHVRNGHSRLWFLGQYVLELAFCEFFLQRYPRESPGPMRERVFALIGKKVLPKWLKAASLHNLVFPYDDLDKMIRKDREPPSKAVFWALFGAIYLCFGMPEVYRVLFEAFGMDPDDESCQPKLRRQLEDVDYVSVEFEKRQLTWQDVAAYRPPPDALFAHPRLFRACVPPGMHRFRGNIWDFDSRPKVMNTLGYPLPMNDRIPEITEARNIELGLGLQLCFLHPSKHKFEHPRFCFERLEYVGQKIQDLVLAERLLMKHLDAPGRWLAEKHRRMLMNKYCGRYLRDKHLHHYVIYGESVQEKFEHNRRLRNPSTTSVQQALHGLAYCVYGKPDVRRLMFEVFDFEQVQPKAV